Special

GgaEX0019365 @ galGal3

Exon Skipping

Gene
ENSGALG00000012810 | ATP6V0A4
Description
NA
Coordinates
chr1:58397100-58399675:+
Coord C1 exon
chr1:58397100-58397193
Coord A exon
chr1:58398394-58398512
Coord C2 exon
chr1:58399459-58399675
Length
119 bp
Sequences
Splice sites
3' ss Seq
CTTTCCACCTTTTCCCAAAGATC
3' ss Score
8.2
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
TAAGGAAGTGCTTCTCGACAACACGGTGCTGCAGTTGGATCCGGCAGTCCCAGGGGTCTACTCTGGAAATCCATACCCATTTGGAATAGATCCA
Seq A exon
ATCTGGAACATTGCATCAAACAAGTTGACTTTTCTGAACTCCTACAAAATGAAGATGTCAGTTGTGATTGGGATTGTGCATATGATTTTTGGGGTGATACTCAGTCTCTTTAACCACAT
Seq C2 exon
CTACTTCAAGAAATACATAAACATTATCCTGCAGTTCATTCCAGAGATGATCTTTATTATATCTCTTTTTGGCTACCTCGTCTTCATGATTATTTTCAAATGGTGTCATTTTGATGTCCACTCATCACAGAGCGCACCAAGCATTCTCATCCACTTCATCAATATGTTTCTGTTTAATTACAGTGATGCTTCTAATGCTCCACTATATCTGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012810-'14-15,'14-14,15-15
Average complexity
S
Mappability confidence:
88%=100=75%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0149614=V_ATPase_I=FE(3.9=100)
A:
PF0149614=V_ATPase_I=FE(4.9=100)
C2:
PF0149614=V_ATPase_I=FE(9.0=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTGCTTCTCGACAACACGG
R:
TGGATGAGAATGCTTGGTGCG
Band lengths:
242-361
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]