RnoEX6013208 @ rn6
Exon Skipping
Gene
ENSRNOG00000013428 | Atp6v0a4
Description
ATPase H+ transporting V0 subunit a4 [Source:RGD Symbol;Acc:1305055]
Coordinates
chr4:65747126-65756750:-
Coord C1 exon
chr4:65756657-65756750
Coord A exon
chr4:65750683-65750801
Coord C2 exon
chr4:65747126-65747342
Length
119 bp
Sequences
Splice sites
3' ss Seq
TTGTCATGTTTCTTACCCAGATT
3' ss Score
8.04
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
TGCTCATGTCGTGGAACAGAATCCGTATTTGCAGCTGGATCCGGCCATCCCAGGAGTGTATTCTGGAAATCCCTACCCATTTGGGATTGATCCG
Seq A exon
ATTTGGAACCTGGCTTCAAACAAACTCACATTTTTAAACTCCTACAAGATGAAGATGTCGGTCATCCTGGGAATCGTTCATATGATCTTCGGTGTTATCCTCAGCCTCTTCAATCACAT
Seq C2 exon
CTACTTCAGACGAACCCTCAACATCATTCTGCAGTTCATCCCCGAGATGATTTTTATGCTGAGTCTGTTTGGATACCTGGTTTTCATGATCATTTTCAAGTGGTGTCAATATGATGCCCACACATCCCAGAAGGCACCCAGCATCCTCATCCACTTCATCGGCATGTTTCTGTTTGACTACGATGACTCGTCCAACGCACCCCTGTACGGCCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013428-'19-26,'19-25,21-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.0=100)
A:
PF0149614=V_ATPase_I=FE(5.1=100)
C2:
PF0149614=V_ATPase_I=FE(9.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGTCGTGGAACAGAATCCGT
R:
AAGTGGATGAGGATGCTGGGT
Band lengths:
246-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]