BtaEX6029361 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008542 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr4:113486624-113487462:+
Coord C1 exon
chr4:113486624-113486766
Coord A exon
chr4:113486896-113486944
Coord C2 exon
chr4:113487247-113487462
Length
49 bp
Sequences
Splice sites
3' ss Seq
AGCATTTGTCTTCCCCGCTTTAC
3' ss Score
-9.18
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
CTACTGCACAACGGCACGTGTGTGCCCCCTGCCGAGTGCCCCTGCACCCAGCTGTCTCTGCCCTGGGGCCTCACCTTGACTCTTGAAGAGCAGCATCGAGAGCTGCCCCCAGGGACTCTGCTCACCCAGAACTGCACCCACTG
Seq A exon
TACTAGCCAAGGTGGAGCCTTCAGCTGCTCCCTCACTGACCTGTCAGAG
Seq C2 exon
TGCCCCCCCGGAGAAACGTGGCAACACGTGGCCCCCGGGGAGCTGGGGCCCTGCGAGCAGACGTGCCGGGAACCCAACGCCACAGAGACCCAGGGCAACTGCAGTGGGAGGCAGGCCCCGGGCTGTGTGTGCCAGCGCGGGCACTTCCGCAGCCAGGAGGGCCCCTGCGTGCCCGTGGATCTCTGCGAGTGCTGGCACCATGGGCGCCCCCACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008542-'111-112,'111-110,112-112=AN
Average complexity
A_NA
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.188 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PD(21.8=25.0)
A:
NO
C2:
PF0182612=TIL=WD(100=86.1),PF0009313=VWC=PU(14.3=11.1),PF053758=Pacifastin_I=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAGCAGCATCGAGAGCTG
R:
GTCTCTGTGGCGTTGGGTTC
Band lengths:
148-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]