HsaEX0061908 @ hg38
Exon Skipping
Gene
ENSG00000197558 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr7:149826679-149827985:+
Coord C1 exon
chr7:149826679-149826821
Coord A exon
chr7:149826913-149826959
Coord C2 exon
chr7:149827769-149827985
Length
47 bp
Sequences
Splice sites
3' ss Seq
GTGTGCTTCTGTCTTCTCAGTGT
3' ss Score
9.45
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
Exon sequences
Seq C1 exon
CTGCTGCACAATGGCACGTGTGTGCCTCCCACTGCCTGCCCCTGCACCCAGCATTCTCTGCCCTGGGGCCTCACCCTGACCCTGGAAGAGCAGGCCCAGGAGCTGCCCCCAGGGACTGTGCTCACCCGGAACTGCACCCGCTG
Seq A exon
TGTCTGCCACGGTGGAGCCTTCAGCTGCTCCCTCGTTGACTGTCAGG
Seq C2 exon
AGTGCCCCCTGGGGAAACGTGGCAGCAGGTGGCCCCGGGGGAGCTGGGGCTCTGCGAGCAGACGTGCCTGGAGATGAACGCCACAAAGACCCAGAGTAACTGCAGTTCAGCTCGAGCCTCGGGCTGCGTGTGCCAGCCCGGGCACTTCCGCAGCCAGGCAGGCCCCTGCGTCCCCGAAGACCACTGCGAGTGCTGGCACCTTGGGCGTCCCCACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197558_MULTIEX5-5/5=4-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGACCCTGGAAGAGCAGG
R:
GTTCATCTCCAGGCACGTCTG
Band lengths:
148-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development