DreEX0064561 @ danRer10
Exon Skipping
Gene
ENSDARG00000067859 | scospondin
Description
subcommissural organ spondin [Source:ZFIN;Acc:ZDB-GENE-051114-1]
Coordinates
chr24:40265929-40267730:+
Coord C1 exon
chr24:40265929-40266074
Coord A exon
chr24:40267376-40267422
Coord C2 exon
chr24:40267566-40267730
Length
47 bp
Sequences
Splice sites
3' ss Seq
CTGTTTGTGTTTAATTACAGTGT
3' ss Score
7.86
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GTGATGCTCAACGGGACGTGTGTTTCTCAATCCCAGTGTCCGTGTTCAGTGTTCTCGCTCCTGCTGGAGTCTACAAACAGCACTCTGGATTTCCAGGATCACGAGGTTCCAGCCGGGACCGTCATCCCCAACTCCTGCAACTCATG
Seq A exon
TGTCTGTGAAGGCGGATTCTTTACCTGCACTAATGAGTCATGTGACG
Seq C2 exon
TGGACTGTGAGTGGAGCAGCTGGTCCTCTTGGAGCTCGTGTTCGGTGTCCTGTGGCTCTGGTCAACAGTTCTCCAGCCGGACGATACACCGCCAGCGGCAGTATGCAGGACAGGAGTGCGAGGGTCCCACACACACCTCACAGACCTGCAGGAGCCCCGAGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000067859-'107-112,'107-111,108-112
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0182612=TIL=PD(21.8=24.5)
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCCCAACTCCTGCAACTC
R:
CACTCCTGTCCTGCATACTGC
Band lengths:
142-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]