GgaEX6017957 @ galGal4
Exon Skipping
Gene
ENSGALG00000004919 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr2:440336-440874:+
Coord C1 exon
chr2:440336-440481
Coord A exon
chr2:440583-440629
Coord C2 exon
chr2:440710-440874
Length
47 bp
Sequences
Splice sites
3' ss Seq
GAGCCCCTCTCTGCCCACAGCGT
3' ss Score
9.45
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
Exon sequences
Seq C1 exon
GTGCTGCAGGATGGAGCCTGTGTGCCCCCCGAGGAGTGCCGCTGCACACTCGACTCCACCATGCCCGGAGTGCTCAACCTGTCACGGGAGGAGCAAGAGCAGGAGCACGCACCGGGCAGCCGCCTGCAGCACCGCTGCAACACGTG
Seq A exon
CGTTTGCATCCGTGGCACCTTCAACTGCTCGCAGGAGGAGTGCAATG
Seq C2 exon
TGGATTGCCTGTGGTCTCCGTGGTCGCCCTGGTCCCCCTGCTCGGTGACGTGTGGGATGGGTGAGCGGCTCTCACACCGGCACCCACTGCGGCAGCGCCTCTATGAGGGGGCTGAGTGCCTGGGGCCCCCCGTGCGCCGGGCTGCCTGCCACCTCCCCGACTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004919-'97-97,'97-96,98-97=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.204 A=0.000 C2=0.018
Domain overlap (PFAM):
C1:
PF0182612=TIL=PD(21.8=24.5),PF053758=Pacifastin_I=PU(40.0=24.5)
A:
PF053758=Pacifastin_I=FE(53.3=100)
C2:
PF053758=Pacifastin_I=PD(3.3=1.8),PF0009014=TSP_1=WD(100=89.3),PF0182612=TIL=PU(10.4=12.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGCTCAACCTGTCACGG
R:
CTCACCCATCCCACACGTCA
Band lengths:
144-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]