RnoEX6013445 @ rn6
Exon Skipping
Gene
ENSRNOG00000025848 | Sspo
Description
SCO-spondin [Source:RGD Symbol;Acc:1549716]
Coordinates
chr4:78129252-78130494:+
Coord C1 exon
chr4:78129252-78129394
Coord A exon
chr4:78129491-78129537
Coord C2 exon
chr4:78130286-78130494
Length
47 bp
Sequences
Splice sites
3' ss Seq
AGTCGCTTCTGTCTTCTTAGCAC
3' ss Score
5.77
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
CTGCTACACAGTGGCACATGCATTCCCCCTGAGGCCTGTCCCTGCACCCGGCTTTCCCTGCCCTGGGGCCTCACCCTACCCTTGGAAGAGCAGGCCCAGGAGCTGCCCTCAGGGACTGTGCTCACCTGGAACTGCACACACTG
Seq A exon
CACCTGTCAAGGAGGAGTCTTCACCTGCTCCCATACGGACTGTCAGG
Seq C2 exon
AGTGCCCTCCTGGGGAAATATTGCAGCTTGGGGAGCTGAGGCCTTGCGAGAAGACATGCCTCGAAATGAACAAGACACAGGCTTGGAGCAACTGCACTGAGGCTCAGGTTCCAGGCTGTGTGTGTCAGCTGGGGCACTTCCGCAGCCACACAGGTCTCTGTGTTCCCGAAGACCACTGTGAATGTTGGCACCATGGGAGTCCCCATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025848-'102-107,'102-106,103-107=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PD(21.8=25.0)
A:
NO
C2:
PF0182612=TIL=WD(100=84.3),PF0009313=VWC=PU(14.3=11.4),PF053758=Pacifastin_I=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCCTACCCTTGGAAGAGC
R:
TTTCGAGGCATGTCTTCTCGC
Band lengths:
139-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]