BtaEX6029387 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008542 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr4:113471297-113472003:+
Coord C1 exon
chr4:113471297-113471503
Coord A exon
chr4:113471590-113471760
Coord C2 exon
chr4:113471924-113472003
Length
171 bp
Sequences
Splice sites
3' ss Seq
CTTCCTCTTCTGTTCCCCAGGAG
3' ss Score
10.91
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
GTCAGCCCACGTGGTCACCCTGGACCCCATGGAGCGAGTGCTCGGCCTCTTGTGGCCCAGCCCGGCGCCATAAACACCGCTTCTGCACCAGGCCCCCCGGTGGGGCACCGTCCAGCATGGCCCCGCCACTCCTGCTGTCCTCGGTGCCCCCTCTTTGCCCAGGCCCCGAGGCAGAGGAGGAGCCCTGCCTCCTGCCAGAGTGTGACC
Seq A exon
GAGCTGGAGGCTGGGGCCCTTGGGGACCCTGGTCCAGCTGTAGCCGGAGCTGTGGAGGGGGTCTCCGGAGCCGGAGCCGAGCCTGTGATCAGCCCCCACCCCAGGGCCTGGGGGATTACTGCGAGGGGCCTCGGGCCCAGGGGGCGGCCTGCCAGGCTCTGCCATGCCCAG
Seq C2 exon
TGACCAACTGCACCGCCATCGAAGGGGCGGAGTACAGCGCCTGTGGCCCTCCCTGCCCTCGCTCCTGCGATGACCTCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008542-'78-77,'78-76,79-77=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.017 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=52.9)
A:
PF0009014=TSP_1=WD(100=87.9)
C2:
PF0182612=TIL=PU(41.8=85.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGCCCACGTGGTCAC
R:
CTGTACTCCGCCCCTTCGAT
Band lengths:
244-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]