MmuEX6004212 @ mm10
Exon Skipping
Gene
ENSMUSG00000029797 | Sspo
Description
SCO-spondin [Source:MGI Symbol;Acc:MGI:2674311]
Coordinates
chr6:48480620-48481316:+
Coord C1 exon
chr6:48480620-48480826
Coord A exon
chr6:48480959-48481129
Coord C2 exon
chr6:48481237-48481316
Length
171 bp
Sequences
Splice sites
3' ss Seq
CTCCTCTGCTGCTCCCTCAGAAG
3' ss Score
6.88
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
GCCAGCCTGCATGGTCATCCTGGACTCCATGGAGTGTGTGTTCAGCCTCCTGCAACCCTGCCCGACGCCACCGGCACCGCTTTTGTGCCAGGCCCCCCCATAGGGCACCCTTCAGTTTGGTTCTGCTGACCACAGTGGCTGCCCCCACAACCCTCTGCCCAGGCCCTGAGGCTGAGGAAGAGCCGTGCCTCCTGCCAGGATGTAATC
Seq A exon
AAGCAGGGGGCTGGAGTCCTTGGAGCCCCTGGTCTGGCTGTAGTCGGAGCTGTGGAGGAGGCCTGCGGAGCCGGACCCGAGCCTGTGACCAGCCGTCACCCCAGGGCCTGGGGGATTTTTGTGAGGGACCTCAGGCCCAGGGGGAGGCCTGCCAGGCTCAGCCATGCCCAG
Seq C2 exon
TGACCAACTGCAGTGCCATGGAAGGGGCAGAGTACAGCCCCTGTGGCCCTCCTTGTCCCCGCTCCTGTGATGACCTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029797-'63-87,'63-76,74-87=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=90.0)
A:
PF0009014=TSP_1=WD(100=87.9)
C2:
PF0182612=TIL=PU(41.8=85.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGTGTGTTCAGCCTCCTG
R:
CACAAGGTCATCACAGGAGCG
Band lengths:
256-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types