RnoEX6013476 @ rn6
Exon Skipping
Gene
ENSRNOG00000025848 | Sspo
Description
SCO-spondin [Source:RGD Symbol;Acc:1549716]
Coordinates
chr4:78113626-78114311:+
Coord C1 exon
chr4:78113626-78113832
Coord A exon
chr4:78113956-78114126
Coord C2 exon
chr4:78114232-78114311
Length
171 bp
Sequences
Splice sites
3' ss Seq
TTCCTCTTCTGCTCTCTCAGAAG
3' ss Score
7.96
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
GCCAGCCTGCATGGTCATCTTGGACTCCATGGAGTGTGTGTTCAGCCTCTTGCAGCCCTGCCAGACGCCACCGACGCCGCTTCTGTGTCAGGCCCTCTACTACAGCTCCCTTCAGCTTGGATCTGCCGACCACAGTGGCTGCCCCCACAATGCTCTGCCCAGGCCCTGAGGCTGAGGAAGAGCCATGCCTCCTGCCAGGATGTAATC
Seq A exon
AAGCAGGGGTCTGGGGTCCTTGGAGTCCCTGGTCTGGCTGTAGTCGGAGCTGTGGAGGAGGCCTGCGGAGCCGGACCCGGGCTTGTGACAAGCCACCACCCCAGGGCCTGGGGGATTTCTGTGAGGGACCTCAGGCCCAGGGGGAGGCCTGCCAGGCCCAACCGTGCCCAG
Seq C2 exon
TGGCCAACTGCAGTACCATTGAAGGGGCGGAGTACAGCCCCTGTGGCCCTCCCTGTCCCCGTTCCTGTGATGACCTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025848-'69-73,'69-72,70-73=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.017 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=90.0)
A:
PF0009014=TSP_1=WD(100=87.9)
C2:
PF0182612=TIL=PU(41.8=85.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGTTCAGCCTCTTGCAG
R:
CAAGGTCATCACAGGAACGGG
Band lengths:
251-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]