GgaEX6011283 @ galGal3
Exon Skipping
Gene
ENSGALG00000018998 | UNC5A
Description
NA
Coordinates
chr13:10413210-10413902:-
Coord C1 exon
chr13:10413722-10413902
Coord A exon
chr13:10413472-10413639
Coord C2 exon
chr13:10413210-10413374
Length
168 bp
Sequences
Splice sites
3' ss Seq
ACGGGTTCCTCTTCCCACAGTGA
3' ss Score
8.38
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
GTGGAGTGGCTGCGCAATGAGGAGCTGGTGGACCCGGCGCTGGATGCCAATGTCTTGGTGACGCCGGAGCACAGCCTGGTGCTGCGCCAAGCCCGCCTGGCCGACACCGCCAACTACACCTGCGTGGCCAAAAACATCGTGGCGCGCCGCCGCAGTGCCTCCGCCGCCATCACCGTCTATG
Seq A exon
TGAATGGCGGCTGGTCGACGTGGACGCAGTGGTCGGGCTGCAGCACCAGCTGCGGACGGGGCTGGCAGAAGCGCAGCCGGACTTGCACCAACCCCACACCCCTCAACGGGGGAGCTTTCTGCGAGGGGCAAAATGTGCAGAAAAGCGCCTGCACCACCCTCTGCCCAG
Seq C2 exon
TGGATGGAGACTGGTCAAAGTGGAGCAAGTGGTCGGTGTGTGGGGCCGAGTGCACACACTGGCGGAGCCGGGAGTGCTCTGAGCCTGCACCCCGCAACGGAGGTCAGGAGTGCCACGGCCCCGAGCTGGAGACCCACAACTGCACCTCCGAGCTGTGCAGCCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018998-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=0.000 C2=0.134
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(63.7=95.1)
A:
PF0009014=TSP_1=WD(100=87.7)
C2:
PF0009014=TSP_1=WD(100=91.1)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATGAGGAGCTGGTGGAC
R:
TCAGAGCACTCCCGGCTC
Band lengths:
250-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]