RnoEX0096617 @ rn6
Exon Skipping
Gene
ENSRNOG00000059840 | Unc5a
Description
unc-5 netrin receptor A [Source:RGD Symbol;Acc:621755]
Coordinates
chr17:10160868-10162540:-
Coord C1 exon
chr17:10162360-10162540
Coord A exon
chr17:10161586-10161753
Coord C2 exon
chr17:10160868-10161032
Length
168 bp
Sequences
Splice sites
3' ss Seq
GTCCTTCTCTATCCGCCCAGTGA
3' ss Score
6.32
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
GTGGAGTGGCTTCGAAATGAGGACCTCGTGGACCCCTCCCTCGATCCCAATGTGTACATCACGCGGGAGCACAGCCTAGTCGTGCGTCAGGCCCGCCTGGCCGACACGGCCAACTACACCTGTGTGGCCAAGAACATCGTAGCCCGTCGCCGAAGCACCTCTGCAGCGGTCATTGTTTATG
Seq A exon
TGAACGGTGGGTGGTCGACGTGGACTGAGTGGTCCGTCTGCAGCGCCAGCTGTGGGCGTGGCTGGCAGAAACGGAGCCGGAGCTGCACCAACCCGGCACCTCTCAACGGGGGCGCCTTCTGTGAGGGGCAGAATGTCCAGAAAACAGCCTGCGCCACTCTGTGCCCAG
Seq C2 exon
TGGATGGGAGCTGGAGTTCGTGGAGTAAGTGGTCAGCCTGTGGGCTTGACTGCACCCACTGGCGGAGCCGCGAGTGCTCTGACCCAGCACCCCGCAATGGAGGTGAGGAGTGTCGGGGTGCTGACCTGGACACCCGCAACTGTACCAGTGACCTCTGCCTGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059840_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.018
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(63.7=95.1)
A:
PF0009014=TSP_1=WD(100=87.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCGATCCCAATGTGTACA
R:
GACACTCCTCACCTCCATTGC
Band lengths:
258-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]