RnoINT0160594 @ rn6
Intron Retention
Gene
ENSRNOG00000059840 | Unc5a
Description
unc-5 netrin receptor A [Source:RGD Symbol;Acc:621755]
Coordinates
chr17:10160868-10161753:-
Coord C1 exon
chr17:10161586-10161753
Coord A exon
chr17:10161033-10161585
Coord C2 exon
chr17:10160868-10161032
Length
553 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCC
5' ss Score
8.63
3' ss Seq
TGCCTGTCTCTCTTGTCCAGTGG
3' ss Score
9.15
Exon sequences
Seq C1 exon
TGAACGGTGGGTGGTCGACGTGGACTGAGTGGTCCGTCTGCAGCGCCAGCTGTGGGCGTGGCTGGCAGAAACGGAGCCGGAGCTGCACCAACCCGGCACCTCTCAACGGGGGCGCCTTCTGTGAGGGGCAGAATGTCCAGAAAACAGCCTGCGCCACTCTGTGCCCAG
Seq A exon
GTACCCGCGGCCACCGCCTCCTGCATCGTTCCTCACCAAGCCATCTCCGTGGCCTGGCTCCATCGCACCCACCAGCCTGCCCCCCCATGGCTCCATCCCACCCGCCTGCCACGCAGGGCCAGGCTCAGTCTGAGGTGGGGATCAGGGTTCAGTGTGGTCAGAGTCAAGGGCTCAGTTTAGGGTCTTAGATGCAATCTGAGGACAGGATCTAGGCTCAGCCTGGGGCTGCACGATCCACCAGTGCCTGGACCAGAAGGGCCATCATGTGACTAAGAGCCCTTACCACCTCAGGACCAGGACTGCCTCCCTGGGTGGAGAGAGCCGAGCAGCCCCCGGCATCATCTCGTCTCCCTGTCATTAGCATGTGTCATCAAGGCTAGCTGGACACTCAAGGTCCTACGGATTGGAGGGCCTGACCCTGGCATTGTACCCAAGCCCAGGCCAGCTCGCCTTGCCTGGTCCAGATGTTTAGCGGGGCCACACAGGCAGGCCACCCAGGCCAACTTCCTAAGCTGACTGTGCTGTTCCATTTCTGCCTGTCTCTCTTGTCCAG
Seq C2 exon
TGGATGGGAGCTGGAGTTCGTGGAGTAAGTGGTCAGCCTGTGGGCTTGACTGCACCCACTGGCGGAGCCGCGAGTGCTCTGACCCAGCACCCCGCAATGGAGGTGAGGAGTGTCGGGGTGCTGACCTGGACACCCGCAACTGTACCAGTGACCTCTGCCTGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059840:ENSRNOT00000087397:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.018
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=87.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACGGTGGGTGGTCGAC
R:
CAGGCAGAGGTCACTGGTACA
Band lengths:
329-882
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]