GgaINT0019307 @ galGal4
Intron Retention
Gene
ENSGALG00000018998 | UNC5A
Description
unc-5 netrin receptor A [Source:HGNC Symbol;Acc:HGNC:12567]
Coordinates
chr13:9656141-9656570:-
Coord C1 exon
chr13:9656403-9656570
Coord A exon
chr13:9656306-9656402
Coord C2 exon
chr13:9656141-9656305
Length
97 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCC
5' ss Score
8.63
3' ss Seq
GATGCCTGCTGTGCCCGCAGTGG
3' ss Score
8.18
Exon sequences
Seq C1 exon
TGAATGGCGGCTGGTCGACGTGGACGCAGTGGTCGGGCTGCAGCACCAGCTGCGGACGGGGCTGGCAGAAGCGCAGCCGGACTTGCACCAACCCCACACCCCTCAACGGGGGAGCTTTCTGCGAGGGGCAAAATGTGCAGAAAAGCGCCTGCACCACCCTCTGCCCAG
Seq A exon
GTACCCCTGTGCCCCCATGGGTGCATCCATCCCAGCCCTGACACAGGGAAGGGGCGCAGGGGATGGTGGCGGGGGCTGATGCCTGCTGTGCCCGCAG
Seq C2 exon
TGGATGGAGACTGGTCAGAGTGGAGCAAGTGGTCGGTGTGTGGGGCCGAGTGCACACACTGGCGGAGCCGGGAGTGCTCTGAGCCTGCACCCCGCAACGGAGGTCAGGAGTGCCACGGCCCCGAGCTGGAGACCCACAACTGCACCTCCGAGCTGTGCAGCCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018998:ENSGALT00000029975:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.036
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=87.7)
A:
NA
C2:
PF0009014=TSP_1=WD(100=91.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGTGCAGAAAAGCGCCTG
R:
GTGCAGTTGTGGGTCTCCAG
Band lengths:
183-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]