DreINT0171863 @ danRer10
Intron Retention
Gene
ENSDARG00000033327 | unc5b
Description
unc-5 homolog B (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-041213-1]
Coordinates
chr13:29070267-29070674:+
Coord C1 exon
chr13:29070267-29070434
Coord A exon
chr13:29070435-29070509
Coord C2 exon
chr13:29070510-29070674
Length
75 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
TCACTGATGTGTTTTCCTAGTGG
3' ss Score
7.31
Exon sequences
Seq C1 exon
TAAGTGGAGGCTGGTCATCCTGGACAGAGTGGTCAGAATGTAATGCTCAGTGTGGGCGGGGCTGGCAGAGACGGACACGCAGCTGCACCAATCCAGCACCACTCAATGGAGGAGCCTTCTGTGATGGACCGCCCTTCCAGAGAGTCACCTGTACCACCCTCTGTCCAG
Seq A exon
GTAAACGCTCAACACAAATTCACCCCTGTAACCTTTGACCTGAGCCACTGTGTAATCACTGATGTGTTTTCCTAG
Seq C2 exon
TGGATGGAGGCTGGACCGAGTGGGCCAAGTGGTCTGCGTGTGGGACGGAGTGCACACATTGGCGCAGTCGTGAATGTCAGGCTCCACCGCCACGTAATGGAGGACGACACTGCAGCGGCAGCATGATGGAGAGCAAGAACTGCACTGAGGGATTATGTGCACGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000033327:ENSDART00000045951:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.018
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PU(94.3=89.3)
A:
NA
C2:
PF0009014=TSP_1=PD(1.9=1.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCAATCCAGCACCACTCAA
R:
GGAGCCTGACATTCACGACTG
Band lengths:
168-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]