BtaINT0157565 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014270 | UNC5B
Description
Bos taurus unc-5 homolog B (C. elegans) (UNC5B), mRNA. [Source:RefSeq mRNA;Acc:NM_001099029]
Coordinates
chr28:27588287-27589329:+
Coord C1 exon
chr28:27588287-27588454
Coord A exon
chr28:27588455-27589164
Coord C2 exon
chr28:27589165-27589329
Length
710 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CACACGCTGTGTCCCCACAGTCG
3' ss Score
9.41
Exon sequences
Seq C1 exon
TGAATGGTGGCTGGTCCAGCTGGGCAGAGTGGTCGCCCTGCTCTAACCGCTGTGGCCGCGGCTGGCAGAAGCGCACGCGGACCTGCACCAACCCTGCCCCGCTCAACGGAGGTGCCTTCTGCGAGGGCCAGGCCTTCCAGAAGACTGCCTGCACCACCGTGTGCCCAG
Seq A exon
GTAAGGCCACAAGCCAGGTGGCACCGCACTCGCGCCCAGCCCTGCCTTCTGTGCTGTGGGGTCACAGAGTCAGGACCACTGACTTCTCCCCTTCTGGGCTTGTCCTGGGACCCACGGCTGGCTGACCCTGCTGGACCAGGTGCTGTGACCTCTGACCTCTTGTTCCGCCCTGTGCTGTGGGAGAGACGGAGGCAGAGGCTCTTGGGGGTAGGCTCCCTGCCCTCTGGGCTGGGGGTTCTCCGTGTCAGCCCCCAGGCCAGGGTCCCAGAGGCACCCGGCGTCAGAGTGCCTGTGCTCCTGCCCTTGACTGCTCGGCACACCTGGCCGCTGACCGCCATCTTGCTGCAGTCCTCTTTTCCTTGTGTCTCGCTCTGTATCCCCATCAGTGGGTCTGTGCTCTCTCTCTCTGGTGGCGTGTTTATGTGAATGTGTGGTGTTTTTCACCTGGGTTTGTGCCTCTGCTGAACCCTGTGCAAGTCTGCGCCGGTGATCTTATGTGTGTGTCTGGAGCTACCGTTGCCCACCTGAGCTCCCTGACTCTCATCTGGCCCGTGGTGTGATTTCTCCGGACGGCCTGTGTATGTCTTGGACTCCTCTTCCCCTGCTGTACTCTGTGTGTGCATGCTCTGCTGTGTTGTGCACATGTAATCGTGTGTGCAGGCGCCCGTGCGTGCCCACGTCCCCATGGACCACACGCTGTGTCCCCACAG
Seq C2 exon
TCGACGGCGGGTGGACGGAGTGGAGCAAGTGGTCAGCCTGTAGCACCGAGTGTGCGCACTGGCGCAGCCGCGAGTGCATGGCACCCCCACCCCAGAACGGAGGCCGGGACTGCAGCGGGACCCTGCTCGACTCCAAGAACTGCACTGATGGGCTGTGCGTACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014270:ENSBTAT00000018961:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=89.5),PF150281=PTCRA=PU(19.0=38.6)
A:
NA
C2:
PF150281=PTCRA=FE(47.4=100),PF0009014=TSP_1=WD(100=85.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATGGTGGCTGGTCCA
R:
TTTGTACGCACAGCCCATCAG
Band lengths:
333-1043
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]