GgaINT0042387 @ galGal3
Intron Retention
Gene
ENSGALG00000004569 | UNC5B
Description
NA
Coordinates
chr6:12865428-12865941:+
Coord C1 exon
chr6:12865428-12865595
Coord A exon
chr6:12865596-12865776
Coord C2 exon
chr6:12865777-12865941
Length
181 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CTGTGTTTGGTGGCCTGCAGTGG
3' ss Score
6.44
Exon sequences
Seq C1 exon
TGAACGGTGGCTGGTCCACCTGGTCCGAGTGGTCTCCTTGCAACAACCGCTGTGGCCGGGGCTGGCAGAAGCGCACCCGGACGTGTACCAACCCTGCCCCACTCAATGGCGGCTCCTTCTGCGATGGGCAGCCCTTCCAGAAAGTAACCTGCACCACGCTCTGCCCAG
Seq A exon
GTAAGGGGGTCACAAACCTGCTGTCCTACCCCAGCTGCATGCTCCAGCCGTGCTCCTCATGGAGATGCCATCAGGGCTGGTGTTCGCATCTCCACGGAGCTCACCTTTAGATGGGTGCTGGCACCTTCCTGCTGTCGGGACTCGTGTCTGCAGCAGCGTGTCTGTGTTTGGTGGCCTGCAG
Seq C2 exon
TGGACGGTGCATGGACGGAGTGGAGCAAGTGGTCAGCATGCAGCACCGAGTGCACCCACTGGCGCAGCCGCGAGTGCTCTGCACCGGCTCCGCGCAACGGCGGCAAGGATTGCAGCGGCGGGCTGCTCGACTCCAAGAACTGCACCGATGGGCTCTGCCTGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004569:ENSGALT00000033690:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PU(96.2=89.5)
A:
NA
C2:
PF0009014=TSP_1=PD(1.9=1.8),PF0009014=TSP_1=WD(100=85.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCGGACGTGTACCAAC
R:
CCATCGGTGCAGTTCTTGGAG
Band lengths:
246-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]