HsaINT0177872 @ hg38
Intron Retention
Gene
ENSG00000107731 | UNC5B
Description
unc-5 netrin receptor B [Source:HGNC Symbol;Acc:HGNC:12568]
Coordinates
chr10:71287598-71288732:+
Coord C1 exon
chr10:71287598-71287765
Coord A exon
chr10:71287766-71288567
Coord C2 exon
chr10:71288568-71288732
Length
802 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TGTATGCCATGCTCTTACAGTCG
3' ss Score
7.67
Exon sequences
Seq C1 exon
TGAATGGCGGCTGGTCCAGCTGGGCAGAGTGGTCACCCTGCTCCAACCGCTGTGGCCGAGGCTGGCAGAAGCGCACCCGGACCTGCACCAACCCCGCTCCACTCAACGGAGGGGCCTTCTGCGAGGGCCAGGCATTCCAGAAGACCGCCTGCACCACCATCTGCCCAG
Seq A exon
GTAAGGAGCCTTGTCCATGTCCAGCCCCACCCCGAACCCTGTCCCACCTTCTGTTTTGTGTGCCAGAGCCGGGACAGCCATTCTCTCCCCAGCATGGGGAGCAGAAGGTGCTTGTCCCGAGCCCACAGCCGGCTGCCCAGGCTGACTAGATGCTCTGATCTCTGACCCCTTATTCTGCCCTGGGCTGCTGGTGAGATGGAGGCAGAGGCTTTGAGGGTTAGCCCCTTCTCCCTGACCCTCTAGCCTGGGCTCTTCTGCCCTCCAAGCTGAGGGTTCTCAGTGTCAGCATGTCAGCCCCAGGCCAAGGTTTCAGAGCTCCCCGGCCTCAGGGACAGCCTGTTGCTCCTGACTGTTAAGACACACCGTGGCCACAGACCCTATTCATACTGACAGTCCTCCTATTCCTCTCATCCTCTGTGCAGCCCCTCTGCTCCCCTACCCCCGCACATGTGCTGTGTTCTCTCCCTTGGGTTGTATGTTTGTGCCTACGCTGTTTTTCTTTACCCTGGGTTTGTGTCTGTGTGTGTAAATCGTGCACTGGGCTATATCGTGTTGATGACCTTATACATCTATCTGTACCCTCTTTGTCCACCTGCCAGGTGCATCTGGCTGTTCATTGGCATGGGGTTATGTGGATATCATGTGGATTTCTCTGTGTGGCACACATGTGTTCTGGGTTCCTCATTTCCTTCCATGGTGTGTATGCATGCATGTGTGTTGGCACATTGCTCTGTTCTGCACACATAACTATGTGTGCACATGTCTCTGCGTGCACATGCTCCTGTATGCCATGCTCTTACAG
Seq C2 exon
TCGATGGGGCGTGGACGGAGTGGAGCAAGTGGTCAGCCTGCAGCACTGAGTGTGCCCACTGGCGTAGCCGCGAGTGCATGGCGCCCCCACCCCAGAACGGAGGCCGTGACTGCAGCGGGACGCTGCTCGACTCTAAGAACTGCACAGATGGGCTGTGCATGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107731:ENST00000373192:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=89.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGGCGGCTGGTCCAG
R:
TTTGCATGCACAGCCCATCT
Band lengths:
332-1134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains