RnoINT0160610 @ rn6
Intron Retention
Gene
ENSRNOG00000000567 | Unc5b
Description
unc-5 netrin receptor B [Source:RGD Symbol;Acc:621756]
Coordinates
chr20:30354479-30355377:-
Coord C1 exon
chr20:30355210-30355377
Coord A exon
chr20:30354644-30355209
Coord C2 exon
chr20:30354479-30354643
Length
566 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
CCCATGCTGTACTCCTACAGTGG
3' ss Score
5.9
Exon sequences
Seq C1 exon
TGAACGGAGGTTGGTCCAGCTGGGCAGAATGGTCACCCTGCTCTAACCGCTGCGGCCGAGGTTGGCAGAAACGTACTAGGACCTGCACCAACCCAGCCCCACTCAATGGAGGTGCCTTCTGCGAGGGACAGGCTTTCCAGAAGACGGCTTGCACCACCGTGTGCCCAG
Seq A exon
GTAGGAGCCACAAGCCCATCCTGGCTCTTCTGCCCATGGGATAGGTATAGAGTTGGGACGGTACAGAGCCCAGGTCCAGTGTACTCTATGGTCTCTAGTTTCTGGTTCAGTCCCAGGCTGCTTGGGAGCTGGGATCAGAGGCATTGAGCTGCAGCTGGACAGGGCTGAGCCTGGCTTCAGGGGCTGCTGGGGTCCCAGAGAGCTCCCTGCATGTATCTGTTGAGATGCCCATTAGCCACAGATACACATACTGTCAGCAGCCTCCTTTCTGACTGTCTTGTCCTGGTTCTGGGTTCGTTTGCCACTCTGTGCCTGTGCTCTGGTTGTGTGTGTGTGTGTGACCCCGTGTGACTGTTTTCTCGCCCAGGTTTTGTGCCAGTAACCTTGAGTATCTTTACCCTCGTCTACCAAGTGCATCTAACTGTCCCCAGCCCGACGCTCTGTGGATTTACTGATTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTTTCTGTGTCTCCCCTTGCTTGCCTAACTGCGTGTCCGTGCCCATGCTGTACTCCTACAG
Seq C2 exon
TGGATGGAGCGTGGACTGAGTGGAGCAAGTGGTCCGCCTGCAGCACAGAGTGTGCGCACTGGCGCAGCCGCGAGTGCATGGCACCGCCGCCCCAGAACGGAGGCCGCGACTGCAGCGGGACGCTACTTGACTCCAAGAACTGCACCGATGGGCTGTGCGTGCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000567:ENSRNOT00000038537:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.018
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=89.5)
A:
NA
C2:
PF0009014=TSP_1=WD(100=85.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGGAGGTTGGTCCAGCT
R:
CAGCACGCACAGCCCATC
Band lengths:
331-897
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]