MmuINT0170578 @ mm10
Intron Retention
Gene
ENSMUSG00000025876 | Unc5a
Description
unc-5 netrin receptor A [Source:MGI Symbol;Acc:MGI:894682]
Coordinates
chr13:54997193-54998080:+
Coord C1 exon
chr13:54997193-54997360
Coord A exon
chr13:54997361-54997915
Coord C2 exon
chr13:54997916-54998080
Length
555 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCG
5' ss Score
10.05
3' ss Seq
TGCCTGTCTCTCTTGTTCAGTGG
3' ss Score
9.56
Exon sequences
Seq C1 exon
TGAACGGTGGGTGGTCGACGTGGACCGAGTGGTCCGTCTGCAGTGCCAGCTGTGGGCGTGGCTGGCAGAAACGGAGCCGGAGCTGCACCAACCCGGCACCTCTCAACGGGGGCGCCTTCTGTGAGGGGCAGAATGTCCAGAAAACAGCCTGCGCCACTCTGTGCCCAG
Seq A exon
GTACCGGCAGCCACCGACTCCTGCATCGTTCCTCACCACGCCATCTCCGTGGCCTGGCTCCATCGCACCCACCAGCCTGCCCGCCCCCTCCCCCATGGCTCCATCCCACCCGCCTGCCACACACAGGGCCAGGCTCAGTCTGAGGTGGGGATCAGGGTGCAGTGTGGTCAGAGTCAAGGGCTCGGTTTAGGGTCTAAGGTGCAGTTTTAGGACAGGATCTAGGCTCCGCCTGGGGCTGCACAATCCACCTGTGCCTGGACCAGAAGGGCCATCATGTGACTAGGAGCCCTTACCGCCTCAGGACAGGGACAGCCTCCCTGGGTTGAGAGAGCCGAGCAGGCCCCAGCATCATTGCGTCTCCTTGTCATTAGCATGTGTCATCAAGGCTAGCTGGACACTCAAGGTCCGACCGATCAGAGGGCCTGACCCTGGCATTGTACCCAAGCCCAGGCCCTGCCTGGTCCAGATGACTAGCGGGGCCACCCAGGCCAGCCACCCAGGCCAACCTCCTAAGCTGACTGTCCCATTCCCTCTCTGCCTGTCTCTCTTGTTCAG
Seq C2 exon
TGGATGGGAGCTGGAGCCCATGGAGTAAGTGGTCAGCCTGCGGGCTTGACTGCACCCACTGGCGGAGCCGGGAGTGCTCCGACCCAGCGCCCCGCAACGGAGGTGAGGAGTGCCGGGGTGCTGACCTGGACACCCGCAACTGTACCAGTGACCTCTGCCTGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025876:ENSMUST00000026994:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.057
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=87.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACGGTGGGTGGTCGAC
R:
CAGGCAGAGGTCACTGGTACA
Band lengths:
329-884
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types