RnoINT0160593 @ rn6
Intron Retention
Gene
ENSRNOG00000059840 | Unc5a
Description
unc-5 netrin receptor A [Source:RGD Symbol;Acc:621755]
Coordinates
chr17:10161586-10162540:-
Coord C1 exon
chr17:10162360-10162540
Coord A exon
chr17:10161754-10162359
Coord C2 exon
chr17:10161586-10161753
Length
606 bp
Sequences
Splice sites
5' ss Seq
ATGGTGGGT
5' ss Score
6.18
3' ss Seq
GTCCTTCTCTATCCGCCCAGTGA
3' ss Score
6.32
Exon sequences
Seq C1 exon
GTGGAGTGGCTTCGAAATGAGGACCTCGTGGACCCCTCCCTCGATCCCAATGTGTACATCACGCGGGAGCACAGCCTAGTCGTGCGTCAGGCCCGCCTGGCCGACACGGCCAACTACACCTGTGTGGCCAAGAACATCGTAGCCCGTCGCCGAAGCACCTCTGCAGCGGTCATTGTTTATG
Seq A exon
GTGGGTCCTGGGCTCCCCAGTCACAGGAAGAGGTACTGAGGTGCCAACAGGGACGTGATGCGTGGCTCAGAGGATGGAAAGGCATGGAGCAAGGGCCAGGCTAACCAAACAGTGGCCTGACTAGGAAAGAGGGCAGAAGTATATCTGGGCAAAGGGATGGAACATGTTGGTCACTTGTGAGTGGGGAGCACGGTGTAAGAGATGAAGAGACGAGAGGAAGCTAAGAGGGATATAACACGTCGTCCTTGGGTTTCTCAGTCCCAGAACGGGAAGTAGAGCCACAGAATGAGACGCACCCCCTCCCCCAAGAGCAGGCAGAGGGAGGTCAGACAGGAGCTTCCCTGTGAGAAGCTGGATTCCAGCTGGAGGTGCCCTGTGAACTGCAGCCTGGCCACCCCGACATTTGCCAAGAGTATCTGAAGGCTCTGGGGCCCCCTCCCCCATCCCTGCAGCCTAGGCTTGGCGTTCCCTCAGGGTTTCTCCCGGCTCAGCAACAGCCCACTCACTCCCAGCTCACAGGCCCTTTGCCCTCCCGCCCCATCCCTTGGACCAGCATGTCTGAGGAAGCCCCCGCTCCCTGACCCCAGTCCTTCTCTATCCGCCCAG
Seq C2 exon
TGAACGGTGGGTGGTCGACGTGGACTGAGTGGTCCGTCTGCAGCGCCAGCTGTGGGCGTGGCTGGCAGAAACGGAGCCGGAGCTGCACCAACCCGGCACCTCTCAACGGGGGCGCCTTCTGTGAGGGGCAGAATGTCCAGAAAACAGCCTGCGCCACTCTGTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059840:ENSRNOT00000087397:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(63.7=95.1)
A:
NA
C2:
PF0009014=TSP_1=WD(100=87.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGTGGCTTCGAAATGAGG
R:
CGCAGGCTGTTTTCTGGACAT
Band lengths:
334-940
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]