GgaINT0019306 @ galGal3
Intron Retention
Gene
ENSGALG00000018998 | UNC5A
Description
NA
Coordinates
chr13:10413472-10413902:-
Coord C1 exon
chr13:10413722-10413902
Coord A exon
chr13:10413640-10413721
Coord C2 exon
chr13:10413472-10413639
Length
82 bp
Sequences
Splice sites
5' ss Seq
ATGGTACAG
5' ss Score
3.5
3' ss Seq
ACGGGTTCCTCTTCCCACAGTGA
3' ss Score
8.38
Exon sequences
Seq C1 exon
GTGGAGTGGCTGCGCAATGAGGAGCTGGTGGACCCGGCGCTGGATGCCAATGTCTTGGTGACGCCGGAGCACAGCCTGGTGCTGCGCCAAGCCCGCCTGGCCGACACCGCCAACTACACCTGCGTGGCCAAAAACATCGTGGCGCGCCGCCGCAGTGCCTCCGCCGCCATCACCGTCTATG
Seq A exon
GTACAGCCCCGCTGCTGCCTCCTCACCATGCCACCCCATCGTCTCCCGCTGTCCCCCAGCCAACGGGTTCCTCTTCCCACAG
Seq C2 exon
TGAATGGCGGCTGGTCGACGTGGACGCAGTGGTCGGGCTGCAGCACCAGCTGCGGACGGGGCTGGCAGAAGCGCAGCCGGACTTGCACCAACCCCACACCCCTCAACGGGGGAGCTTTCTGCGAGGGGCAAAATGTGCAGAAAAGCGCCTGCACCACCCTCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018998:ENSGALT00000029975:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(63.7=95.1)
A:
NA
C2:
PF0009014=TSP_1=WD(100=87.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGTGGCCAAAAACATCG
R:
CAGAAAGCTCCCCCGTTGAG
Band lengths:
183-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]