DreEX6061716 @ danRer10
Exon Skipping
Gene
ENSDARG00000033327 | unc5b
Description
unc-5 homolog B (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-041213-1]
Coordinates
chr13:29068436-29070674:+
Coord C1 exon
chr13:29068436-29068616
Coord A exon
chr13:29070267-29070434
Coord C2 exon
chr13:29070510-29070674
Length
168 bp
Sequences
Splice sites
3' ss Seq
CTCTGGCTCTCTGTTATTAGTAA
3' ss Score
5.61
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
GTGGACTGGCTAAAGAACGAAGAGCTCATTGACCCGGCGCTGGATTCTAACTTTCTAATTACCATCGAGCACGACCTGATCATCAAACAGGCTCGACTCTCTGACACTGCCAACTACACCTGTGTGGCACGTAATGTGGTCGCTAAGAGACGCAGCAGCACTGCCACTCTCATCGTCTACG
Seq A exon
TAAGTGGAGGCTGGTCATCCTGGACAGAGTGGTCAGAATGTAATGCTCAGTGTGGGCGGGGCTGGCAGAGACGGACACGCAGCTGCACCAATCCAGCACCACTCAATGGAGGAGCCTTCTGTGATGGACCGCCCTTCCAGAGAGTCACCTGTACCACCCTCTGTCCAG
Seq C2 exon
TGGATGGAGGCTGGACCGAGTGGGCCAAGTGGTCTGCGTGTGGGACGGAGTGCACACATTGGCGCAGTCGTGAATGTCAGGCTCCACCGCCACGTAATGGAGGACGACACTGCAGCGGCAGCATGATGGAGAGCAAGAACTGCACTGAGGGATTATGTGCACGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000033327-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=0.000 C2=0.018
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(64.8=96.7)
A:
PF0009014=TSP_1=PU(94.3=89.3)
C2:
PF0009014=TSP_1=PD(1.9=1.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGACTCTCTGACACTGCCAAC
R:
GCGTGCACATAATCCCTCAGT
Band lengths:
252-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]