MmuEX6048606 @ mm10
Exon Skipping
Gene
ENSMUSG00000020099 | Unc5b
Description
unc-5 netrin receptor B [Source:MGI Symbol;Acc:MGI:894703]
Coordinates
chr10:60777390-60778964:-
Coord C1 exon
chr10:60778784-60778964
Coord A exon
chr10:60778168-60778335
Coord C2 exon
chr10:60777390-60777554
Length
168 bp
Sequences
Splice sites
3' ss Seq
TTGATGGGCCATCCCTACAGTGA
3' ss Score
5.21
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTGGAATGGCTCAAGAATGAAGATGTCATTGACCCCGCTCAGGACACTAACTTCCTGCTCACCATTGACCACAACCTCATCATCCGCCAGGCGCGCCTCTCAGACACGGCCAACTACACCTGTGTGGCCAAGAATATCGTGGCCAAGCGCCGGAGCACCACGGCCACAGTCATCGTCTATG
Seq A exon
TGAATGGAGGCTGGTCCAGCTGGGCAGAGTGGTCACCCTGTTCCAATCGCTGTGGCCGAGGCTGGCAGAAGCGTACTCGGACCTGCACCAATCCAGCCCCACTCAATGGAGGCGCCTTCTGTGAGGGACAGGCCTTCCAGAAGACAGCTTGCACCACCGTGTGCCCAG
Seq C2 exon
TGGATGGAGCGTGGACCGAGTGGAGCAAGTGGTCTGCCTGCAGCACAGAGTGTGCGCACTGGCGCAGCCGCGAGTGCATGGCACCGCCACCCCAGAACGGAGGCCGTGACTGCAGCGGGACGCTACTTGACTCCAAGAACTGCACTGATGGGCTGTGCGTGCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020099-'7-7,'7-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.013
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(63.7=95.1)
A:
PF0009014=TSP_1=WD(100=89.5)
C2:
PF0009014=TSP_1=WD(100=85.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACCACAACCTCATCATCCGC
R:
CTTGGAGTCAAGTAGCGTCCC
Band lengths:
252-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types