GgaEX6040068 @ galGal3
Exon Skipping
Gene
ENSGALG00000004569 | UNC5B
Description
NA
Coordinates
chr6:12864938-12865941:+
Coord C1 exon
chr6:12864938-12865118
Coord A exon
chr6:12865428-12865595
Coord C2 exon
chr6:12865777-12865941
Length
168 bp
Sequences
Splice sites
3' ss Seq
ATGGCTGTCTCTTCCTGCAGTGA
3' ss Score
9.39
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTGGAGTGGCTAAGGAACGAGGATGTCATTGATCCCACCCAGGACACCAACTTCCTCATCACCATTGATCACAACCTCATCATCAAGCAGGCCCGGCTCTTGGACACTGCTAATTACACCTGCATGGCCAAGAACATCGTAGCCAAGCGCCGGAGCACCACAGCTGCTGTCATTGTCTATG
Seq A exon
TGAACGGTGGCTGGTCCACCTGGTCCGAGTGGTCTCCTTGCAACAACCGCTGTGGCCGGGGCTGGCAGAAGCGCACCCGGACGTGTACCAACCCTGCCCCACTCAATGGCGGCTCCTTCTGCGATGGGCAGCCCTTCCAGAAAGTAACCTGCACCACGCTCTGCCCAG
Seq C2 exon
TGGACGGTGCATGGACGGAGTGGAGCAAGTGGTCAGCATGCAGCACCGAGTGCACCCACTGGCGCAGCCGCGAGTGCTCTGCACCGGCTCCGCGCAACGGCGGCAAGGATTGCAGCGGCGGGCTGCTCGACTCCAAGAACTGCACCGATGGGCTCTGCCTGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004569-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(63.7=95.1)
A:
PF0009014=TSP_1=PU(96.2=89.5)
C2:
PF0009014=TSP_1=PD(1.9=1.8),PF0009014=TSP_1=WD(100=85.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTCATCATCAAGCAGGCC
R:
GGTGCAGTTCTTGGAGTCGAG
Band lengths:
255-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]