RnoEX6062661 @ rn6
Exon Skipping
Gene
ENSRNOG00000000567 | Unc5b
Description
unc-5 netrin receptor B [Source:RGD Symbol;Acc:621756]
Coordinates
chr20:30354479-30356395:-
Coord C1 exon
chr20:30356215-30356395
Coord A exon
chr20:30355210-30355377
Coord C2 exon
chr20:30354479-30354643
Length
168 bp
Sequences
Splice sites
3' ss Seq
GTGATGGCCCATCCCTGTAGTGA
3' ss Score
5.01
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTGGAATGGCTCAAGAATGAAGATGTCATCGATCCCGCTCAGGACACTAACTTCCTGCTCACCATTGACCACAACCTCATCATCCGCCAGGCGCGCCTCTCAGACACAGCCAACTACACCTGTGTGGCCAAGAATATTGTGGCCAAGCGCCGGAGCACGACGGCCACAGTCATCGTCTATG
Seq A exon
TGAACGGAGGTTGGTCCAGCTGGGCAGAATGGTCACCCTGCTCTAACCGCTGCGGCCGAGGTTGGCAGAAACGTACTAGGACCTGCACCAACCCAGCCCCACTCAATGGAGGTGCCTTCTGCGAGGGACAGGCTTTCCAGAAGACGGCTTGCACCACCGTGTGCCCAG
Seq C2 exon
TGGATGGAGCGTGGACTGAGTGGAGCAAGTGGTCCGCCTGCAGCACAGAGTGTGCGCACTGGCGCAGCCGCGAGTGCATGGCACCGCCGCCCCAGAACGGAGGCCGCGACTGCAGCGGGACGCTACTTGACTCCAAGAACTGCACCGATGGGCTGTGCGTGCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000567-'10-7,'10-6,11-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.018
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(63.7=95.1)
A:
PF0009014=TSP_1=WD(100=89.5)
C2:
PF0009014=TSP_1=WD(100=85.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACCACAACCTCATCATCCGC
R:
CTTGGAGTCAAGTAGCGTCCC
Band lengths:
252-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]