BtaEX6105502 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014270 | UNC5B
Description
Bos taurus unc-5 homolog B (C. elegans) (UNC5B), mRNA. [Source:RefSeq mRNA;Acc:NM_001099029]
Coordinates
chr28:27587394-27589329:+
Coord C1 exon
chr28:27587394-27587574
Coord A exon
chr28:27588287-27588454
Coord C2 exon
chr28:27589165-27589329
Length
168 bp
Sequences
Splice sites
3' ss Seq
GACACCTACTACCCTCGCAGTGA
3' ss Score
5.57
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTGGAATGGCTCAAGAATGAGGACGTCATCGACCCCACCCAGGACACCAACTTCCTGCTCACCATCGACCACAACCTCATCATCCGCCAGGCCCGCCTGTCGGACACGGCCAACTACACCTGCGTGGCCAAGAACATCGTGGCAAAGCGCCGCAGCACCACGGCCACCGTCATTGTCTACG
Seq A exon
TGAATGGTGGCTGGTCCAGCTGGGCAGAGTGGTCGCCCTGCTCTAACCGCTGTGGCCGCGGCTGGCAGAAGCGCACGCGGACCTGCACCAACCCTGCCCCGCTCAACGGAGGTGCCTTCTGCGAGGGCCAGGCCTTCCAGAAGACTGCCTGCACCACCGTGTGCCCAG
Seq C2 exon
TCGACGGCGGGTGGACGGAGTGGAGCAAGTGGTCAGCCTGTAGCACCGAGTGTGCGCACTGGCGCAGCCGCGAGTGCATGGCACCCCCACCCCAGAACGGAGGCCGGGACTGCAGCGGGACCCTGCTCGACTCCAAGAACTGCACTGATGGGCTGTGCGTACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014270-'12-7,'12-6,13-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(63.7=95.1)
A:
PF0009014=TSP_1=WD(100=89.5),PF150281=PTCRA=PU(19.0=38.6)
C2:
PF150281=PTCRA=FE(47.4=100),PF0009014=TSP_1=WD(100=85.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGACCACAACCTCATCATCCG
R:
CAGTTCTTGGAGTCGAGCAGG
Band lengths:
258-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]