BtaEX0039137 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014897 | UNC5A
Description
unc-5 homolog A (C. elegans) [Source:HGNC Symbol;Acc:HGNC:12567]
Coordinates
chr7:39683927-39685670:+
Coord C1 exon
chr7:39683927-39684107
Coord A exon
chr7:39684757-39684924
Coord C2 exon
chr7:39685506-39685670
Length
168 bp
Sequences
Splice sites
3' ss Seq
GTCCTTCTCTGTCCGGCCAGTGA
3' ss Score
7.45
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
GTGGAGTGGCTCCGGAACGAGGACCTTGTGGACCCATCCATGGACCCCAATGTGTACATCACGCGGGAGCACAGTCTGGTGGTGCGACAGGCCCGCCTGGCTGACACGGCCAACTACACCTGCGTGGCCAAGAACATCGTGGCTCGTCGCCGCAGCGCCTCCGCTGCTGTCATCGTCTATG
Seq A exon
TGAACGGTGGGTGGTCGACGTGGACTGAGTGGTCTGTCTGCAGCGCCAGCTGTGGGCGCGGCTGGCAGAAAAGGAGCCGGAGCTGCACCAACCCGGCGCCTCTCAACGGGGGTGCCTTCTGTGAGGGGCAGAATGTCCAGAAAACAGCCTGCGCCACCCTGTGCCCAG
Seq C2 exon
TGGATGGCAGCTGGAGCCCATGGAGCAAATGGTCGGCCTGTGGGCTCGACTGTACCCACTGGCGGAGCCGTGAGTGCTCAGACCCCGCGCCCCGCAATGGAGGCGAGGAGTGCCAAGGCACTGACCTGGATACCCGCAATTGTACCAGCGACCTCTGTGTGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014897_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=0.036
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(63.7=95.1)
A:
PF0009014=TSP_1=WD(100=87.7)
C2:
PF0009014=TSP_1=WD(100=91.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGACACGGCCAACTACAC
R:
ACACAGAGGTCGCTGGTACAA
Band lengths:
242-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development