BtaEX6029395 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008542 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr4:113467053-113468886:+
Coord C1 exon
chr4:113467053-113467217
Coord A exon
chr4:113467465-113467717
Coord C2 exon
chr4:113468840-113468886
Length
253 bp
Sequences
Splice sites
3' ss Seq
GCTCTGTCTTCCCTGTGCAGCCC
3' ss Score
10.57
5' ss Seq
CTGGTGGGC
5' ss Score
4.81
Exon sequences
Seq C1 exon
GGCTGGGTGTCTGGGGTCAGTGGGCCGCCTGGTCCGCCTGCTCTGCCCCATGTAATGGGGGCGTCCAGACCCGAGGGCGCAGGTGCTCTGCCTCGGCTCCTGGGGACCCCGGGTGCCAGGGACCCCACAGCCAGACCAGGGACTGCAACACGCAGCCCTGCACAG
Seq A exon
CCCAGTGCCCGGGCGACATGGTGTTCCGCTCAGCAGAACAGTGCCGCTGGGAGGGGGGCCCGTGCCCCGGGCTGTGCCTGGCGCGGGGCCCTGGGGTGGAGTGCACTGGCGTCTGCACCGCTGGCTGCGCCTGCCCTGCGGGCCTCTTCCTGCACAACAGCAGCTGCCTGCCTCCGAGTCAGTGCCCCTGCCAGCTGCGCGGGCAGCTCTATGCCCCCGGAGCAGTGGCCCGGCTGGACTCCTGCAGCAACTG
Seq C2 exon
CACCTGTATCTCTGGTGAGATGGTGTGTGCCTCGGAGCCCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008542-'70-69,'70-68,71-69=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=87.5)
A:
PF0182612=TIL=WD(100=70.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGTGTCTGGGGTCAGTG
R:
CAGGGCTCCGAGGCACAC
Band lengths:
205-458
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]