GgaEX7001538 @ galGal4
Exon Skipping
Gene
ENSGALG00000004919 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr2:426764-427375:+
Coord C1 exon
chr2:426764-426928
Coord A exon
chr2:427001-427253
Coord C2 exon
chr2:427329-427375
Length
253 bp
Sequences
Splice sites
3' ss Seq
GCACCCACTCTCCCCTGCAGCAC
3' ss Score
8.21
5' ss Seq
CTGGTGCGG
5' ss Score
6.48
Exon sequences
Seq C1 exon
TGGCAGGTGTCTGGATGCCTTGGTCAGCCTGGTCTGAGTGCTCTGCTCCCTGCAATGCCGGCGTTCAGACCCGCAGCCGAACCTGCACCCCCCCGGCTTTCGGTGGTGCCGAGTGCACGGGACCCCACCTCCAGACCCGCAACTGCAACACCCGGCCCTGCGGAG
Seq A exon
CACAGTGCCCTGACACCATGCAGTACCTCACGGCGGAGGAGTGCCGGCACAGTGAGGGGCGATGCCCGTGGATCTGCCAGGACCTGGGCGCTGGTGTGGCGTGCACTGCGCAATGCCAGCCTGGCTGCCACTGCCCTGCTGGGCTCCTGCTGCAGAACGGGACCTGTGTGCCACCCAGCCACTGCCTTTGCCACCACCGTGGCCACCTGTACCAGCCTGGGGACATCACTGCGCTCGATACTTGCAACAACTG
Seq C2 exon
CACCTGTGTGGCCGGGCAGATGGTGTGCAGCACAGAGACCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004919-'58-58,'58-57,59-58=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=87.5)
A:
PF0182612=TIL=WD(100=70.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAGGTGTCTGGATGCC
R:
CTGGGCAGGTCTCTGTGCT
Band lengths:
212-465
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]