DreEX6096591 @ danRer10
Exon Skipping
Gene
ENSDARG00000067859 | scospondin
Description
subcommissural organ spondin [Source:ZFIN;Acc:ZDB-GENE-051114-1]
Coordinates
chr24:40219566-40225435:+
Coord C1 exon
chr24:40219566-40219621
Coord A exon
chr24:40223132-40223226
Coord C2 exon
chr24:40225386-40225435
Length
95 bp
Sequences
Splice sites
3' ss Seq
TTTATGTGTGTGTGTATTAGGAT
3' ss Score
9.43
5' ss Seq
CTGGTAAAA
5' ss Score
4.78
Exon sequences
Seq C1 exon
GCACATTGAATGAAAAGAAAACATCAGTGTTTGATGTGTATCCAGGAGTTCAGTGT
Seq A exon
GATGGCGAGTGTGTGCCTGTTTCGCTCTGTCACTGTCATGTAAATGGAGAGCAGCACAAACCCAGAGCCACCGTCAACAAAGACTGCAACAACTG
Seq C2 exon
CACGTGTGAATCAGGAAAGCTGGTCAACTGTACCAGTGTGGATTGTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000067859-'61-67,'61-66,63-67=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF053758=Pacifastin_I=PU(36.4=37.5)
C2:
PF053758=Pacifastin_I=FE(51.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACATTGAATGAAAAGAAAACATCA
R:
CATCACAATCCACACTGGTACA
Band lengths:
106-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]