MmuEX6004220 @ mm10
Exon Skipping
Gene
ENSMUSG00000029797 | Sspo
Description
SCO-spondin [Source:MGI Symbol;Acc:MGI:2674311]
Coordinates
chr6:48475788-48477621:+
Coord C1 exon
chr6:48475788-48475952
Coord A exon
chr6:48476473-48476722
Coord C2 exon
chr6:48477575-48477621
Length
250 bp
Sequences
Splice sites
3' ss Seq
CTCTCTGTCTTCTCATCTAGCCC
3' ss Score
10.15
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
Exon sequences
Seq C1 exon
TGCCGAGTGCCTGGGGTTTATGGGCTTCCTGGTCTACCTGCTCAGCCTCCTGCAATGGTGGCATCCAGACTCGTGGGCGCAGCTGCTCTGGTTCTGCTCCTGGGAACCCTGTGTGCCTAGGACCCCACACTCAGACCAGAGACTGCAACATGCATCCATGCACAG
Seq A exon
CCCAGTGTCCTGGGAACATGGTATTCCGCTCAGCAGAGCAGTGTCTTGAGGAAGGGGGTCCGTGCCCTCAGCTGTGCCTGGCACAGGACCCTGGGGTGGAGTGCACTGGCTCCTGTGCTCCTAGCTGCAACTGTCCCCCTGGCCTCTTCCTGCATAATGCTAGCTGCCTGCCCCGCAGCCAGTGCCCCTGCCAGCTGCATGGGCAGCTCTATGCACCAGGAGCAGTGGCTCACCTAGACTGCAACAACTG
Seq C2 exon
CACCTGCATCTCTGGAGAAATGGTGTGCACCTCAAAGCGCTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029797-'54-74,'54-63,65-74=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=87.5)
A:
PF0182612=TIL=WD(100=71.4),PF053758=Pacifastin_I=PU(40.0=14.3)
C2:
PF053758=Pacifastin_I=FE(53.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGGGGTTTATGGGCTTC
R:
CTGGACAGCGCTTTGAGGTG
Band lengths:
204-454
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types