RnoEX6013482 @ rn6
Exon Skipping
Gene
ENSRNOG00000025848 | Sspo
Description
SCO-spondin [Source:RGD Symbol;Acc:1549716]
Coordinates
chr4:78108602-78110520:+
Coord C1 exon
chr4:78108602-78108766
Coord A exon
chr4:78109287-78109536
Coord C2 exon
chr4:78110474-78110520
Length
250 bp
Sequences
Splice sites
3' ss Seq
CTCTCTGTCTTCTCATCTAGCTC
3' ss Score
10.57
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
Exon sequences
Seq C1 exon
TGCCGAGTGCCTGGGGTTTATGGGCTTCCTGGTCTGCCTGCTCAGCCTCCTGCAATGGTGGTATTCAGACTCGTGGACGCAGCTGCTCTGGGTCTGCTCCTGGGAACCCTGTGTGCCTAGGACCCCACACTCAAACCAGAGACTGCAACGTGCATCCATGCACAG
Seq A exon
CTCAGTGCCCAGGGAACATGGTATTCCGCTCAGCAGAGAAGTGTCTCGAGGAAGGGGGTCCATGCCCTCAGCTGTGCCTGGCGCAGGACCCTGGGGTGGAGTGCACTGGCTCCTGTGCCCCTGGCTGCAGCTGTCCCCCTGGCCTCTTCCTGCATAATGCTAGCTGCCTGCCCCGCAGTCAGTGCCCCTGCCAGCTGCATGGGCAGCTCTATGCACCAGGAGCAGTGGCTCGCCTAGACTGCAACAACTG
Seq C2 exon
CACCTGCAGCTCTGGAGAAATGGTGTGCACCTCAGAGCGCTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025848-'60-64,'60-62,61-64=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=87.5)
A:
PF0182612=TIL=WD(100=71.4),PF053758=Pacifastin_I=PU(40.0=14.3)
C2:
PF053758=Pacifastin_I=FE(53.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGGGGTTTATGGGCTTC
R:
CTGGACAGCGCTCTGAGGT
Band lengths:
204-454
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]