BtaEX6030563 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017704 | ABCG2
Description
Bos taurus ATP-binding cassette, sub-family G (WHITE), member 2 (ABCG2), mRNA. [Source:RefSeq mRNA;Acc:NM_001037478]
Coordinates
chr6:37997766-38007811:+
Coord C1 exon
chr6:37997766-37997923
Coord A exon
chr6:38005467-38005618
Coord C2 exon
chr6:38007707-38007811
Length
152 bp
Sequences
Splice sites
3' ss Seq
TCTTCTCACTATTAATTTAGGAT
3' ss Score
8.45
5' ss Seq
TAGGTATGG
5' ss Score
7.37
Exon sequences
Seq C1 exon
GTTGGAACTCAGTTTATCCGTGGTGTGTCTGGAGGAGAAAGAAAAAGGACTAGTATTGCAATGGAGCTTATTACTGATCCATCCATCTTGTTCCTGGATGAGCCCACAACTGGCTTAGATTCAAGCACAGCAAATGCTGTCCTTTTGCTCCTGAAGAG
Seq A exon
GATGTCTAAACAAGGACGGACAATCATCTTCTCCATTCATCAGCCTCGTTATTCCATCTTCAAGTTGTTTGATAGCCTCACCTTGTTGGCCTCGGGAAGACTCATGTTCCACGGGCCTGCTCAGGAGGCCTTGGGGTACTTTGGAGCCATAG
Seq C2 exon
GTTTCCGCTGTGAGCCCTATAATAACCCTGCAGACTTCTTCCTGGACATCATTAATGGAGATTCTTCTGCTGTGGTGTTAAATAGAGAAGACATAGGTGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017704-'20-12,'20-11,22-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.004 A=0.000 C2=0.144
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(23.8=67.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCAGTTTATCCGTGGTGTGT
R:
TGTCTTCTCTATTTAACACCACAGCA
Band lengths:
245-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]