DreEX6033300 @ danRer10
Exon Skipping
Gene
ENSDARG00000016818 | abcg2d
Description
ATP-binding cassette, sub-family G (WHITE), member 2d [Source:ZFIN;Acc:ZDB-GENE-050517-38]
Coordinates
chr1:49939573-49941043:-
Coord C1 exon
chr1:49940886-49941043
Coord A exon
chr1:49940188-49940339
Coord C2 exon
chr1:49939573-49939662
Length
152 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTGTGTTTTCCAGAAT
3' ss Score
11.19
5' ss Seq
TCGGTGACA
5' ss Score
1.48
Exon sequences
Seq C1 exon
GTGGGCACTCAAATAATCAGGGGGATCTCGGGTGGAGAGAGGAAGAGGACCAGCATCGGGATGGAGCTGATCATTGACCCCTCTGTGCTCTTTTTGGATGAACCCACCACCGGTTTGGACGCTAGTACAGCTCATTCTGTGCTGCTGCTGCTCAAGAG
Seq A exon
AATGGCGGGTCAGGGTCGCACCATCATCATGTCTATTCACCAGCCACGCTTCTCCATCTACCGGCTCTTCGACAGCCTCACCCTGCTGGCCAACGGCAAACAAGTCTATCACGGACCTGCTCAAGACGCCCTCGACTACTTCAGCAACATCG
Seq C2 exon
GATATGCTTGTGAGGCTCATAATAACCCGGCGGATTTCTTCTTGGACGTCATCAATGGCAGCTCAGTGACGAAGATTCAGAATAACGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016818-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(24.7=67.9),PF030589=Sar8_2=PD(40.3=50.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCACTCAAATAATCAGGGGG
R:
TCCGTTATTCTGAATCTTCGTCACT
Band lengths:
245-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]