GgaEX1005642 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr6:18632558-18634146:+
Coord C1 exon
chr6:18632558-18632715
Coord A exon
chr6:18633592-18633743
Coord C2 exon
chr6:18634030-18634146
Length
152 bp
Sequences
Splice sites
3' ss Seq
AATTTTTGTTCCTATTTCAGGCT
3' ss Score
8.95
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTAGGAACTGAATTGATCCGTGGAGTGTCTGGAGGGGAACGGAAAAGAACCAACATCGGGATGGAGCTCATCACAGAGCCACCAGTGCTTTTTCTGGATGAGCCAACAACAGGCCTTGATGCCAGCACGGCCAATGCTGTCCTCATCCTCTTGAAGAA
Seq A exon
GCTCTCTAGAAGAGGCCGAACCATCATATTTTCCATCCATCAGCCCCGCTATTCCATATTCAAGCTGTTTGACAGTCTGACATTACTAGCTTTGGGTAAAGTGCTGTACCATGGTCCTGCAAAACAGGCCCTGGAGTATTTTAGTTCTATTG
Seq C2 exon
GATATGAATGTGAGCCATTTAACAACCCAGCTGACTTCTTCCTTGATATCATAAATGGTGATTCAACTGCTGTGGCAGCAAGCAAGGAAGATCACAAGCCTGCAGACACAGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005792-'5-6,'5-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.000 C2=0.268
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(23.8=67.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATCCGTGGAGTGTCTGGA
R:
CTGTGTCTGCAGGCTTGTGAT
Band lengths:
257-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]