GgaEX1005642 @ galGal4
Exon Skipping
Gene
ENSGALG00000005792 | ABCG2
Description
ATP-binding cassette, sub-family G (WHITE), member 2 (Junior blood group) [Source:HGNC Symbol;Acc:HGNC:74]
Coordinates
chr6:17108486-17110074:+
Coord C1 exon
chr6:17108486-17108643
Coord A exon
chr6:17109520-17109671
Coord C2 exon
chr6:17109958-17110074
Length
152 bp
Sequences
Splice sites
3' ss Seq
AATTTTTGTTCCTATTTCAGGCT
3' ss Score
8.95
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTAGGAACTGAATTGATCCGTGGAGTGTCTGGAGGGGAACGGAAAAGAACCAACATCGGGATGGAGCTCATCACAGAGCCACCAGTGCTTTTTCTGGATGAGCCAACAACAGGCCTTGATGCCAGCACGGCCAATGCTGTCCTCATCCTCTTGAAGAA
Seq A exon
GCTCTCTAGAAGAGGCCGAACCATCATATTTTCCATCCATCAGCCCCGCTATTCCATATTCAAGCTGTTTGACAGTCTGACATTACTAGCTTTGGGTAAAGTGCTGTACCATGGTCCTGCAAAACAGGCCCTGGAGTATTTTAGTTCTATTG
Seq C2 exon
GATATGAATGTGAGCCATTTAACAACCCAGCTGACTTCTTCCTTGATATCATAAATGGTGATTCAACTGCTGTGGCAGCAAGCAAGGAAGATCACAAGCCTGCAGACACAGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005792-'7-9,'7-7,9-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.000 C2=0.325
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(23.8=67.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATCCGTGGAGTGTCTGGA
R:
CTGTGTCTGCAGGCTTGTGAT
Band lengths:
257-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]