DreEX0010207 @ danRer10
Exon Skipping
Gene
ENSDARG00000100075 | abcg2a
Description
ATP-binding cassette, sub-family G (WHITE), member 2a [Source:ZFIN;Acc:ZDB-GENE-050517-35]
Coordinates
chr23:46076175-46081482:+
Coord C1 exon
chr23:46076175-46076332
Coord A exon
chr23:46080432-46080583
Coord C2 exon
chr23:46081384-46081482
Length
152 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTTCGCGTGCAGAAT
3' ss Score
9.73
5' ss Seq
TCGGTACAC
5' ss Score
2.88
Exon sequences
Seq C1 exon
GTGGGGACGCAGCTGATTCGTGGAGTTTCGGGAGGCGAGCGGAAGAGGACGAACATCGGTATGGAGCTGATTATCGATCCGCCGGTGCTGTTTCTGGATGAACCCACGACCGGTCTGGACGCTAGCACTGCTAACTCTGTGCTAATGCTGCTGAAGAA
Seq A exon
AATGGGTAACAACGGGCGCACCATCATCCTCTCCATCCACCAGCCCAGATACTCCATCTATCGACTCTTCGACAGCCTGACGCTGCTGGTGGGAGGAAAACTGGTGTACCATGGCCCGGCACAGGACGCACTCTCATACTTCAGCCAGATCG
Seq C2 exon
GATACACCTGTGAGCCTCATAATAACCCTGCTGATTTCTTCCTGGATGTGATCAATGGAGACTCCAGTGCTGTGACGCTCAACAAGCTCTATGAAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100075-'8-9,'8-8,9-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(24.5=67.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGGACGCAGCTGATTC
R:
CTTGTTGAGCGTCACAGCACT
Band lengths:
244-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]