RnoEX0005332 @ rn6
Exon Skipping
Gene
ENSRNOG00000007041 | Abcg2
Description
ATP binding cassette subfamily G member 2 [Source:RGD Symbol;Acc:631345]
Coordinates
chr4:88864454-88868834:+
Coord C1 exon
chr4:88864454-88864611
Coord A exon
chr4:88866770-88866921
Coord C2 exon
chr4:88868730-88868834
Length
152 bp
Sequences
Splice sites
3' ss Seq
TTTTCCTTCTTGTCATGTAGGAT
3' ss Score
10.53
5' ss Seq
CAGGTATAA
5' ss Score
7.46
Exon sequences
Seq C1 exon
GTTGGAACTCAGTTTACCCGTGGTATCTCTGGAGGAGAAAGAAAAAGGACAAGCATAGGAATGGAGCTCATCACTGACCCTTCCATCCTCTTCCTGGATGAGCCCACAACTGGTTTGGACTCAAGCACAGCAAATGCTGTCCTTTTGCTCCTGAAAAG
Seq A exon
GATGTCTAAACAGGGCCGGACCATCATCTTCTCCATTCACCAGCCTCGGTATTCCATCTTTAAGTTGTTTGACAGCCTCACCTTACTGGCTTCTGGGAAACTCATGTTTCATGGCCCAGCACAGAAGGCCTTGGAGTACTTTGCATCAGCAG
Seq C2 exon
GTTACCACTGTGAGCCCTACAACAACCCTGCAGACTTCTTCCTTGACGTCATCAACGGAGATTCTTCGGCTGTAATGTTAAACAGAGGGGAACAAGACCATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007041-'15-12,'15-10,16-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=0.000 C2=0.250
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(23.8=67.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGTGGTATCTCTGGAGGAG
R:
TCATGGTCTTGTTCCCCTCTGT
Band lengths:
245-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]