BtaEX6030639 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005108 | SLIT2
Description
slit homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:11086]
Coordinates
chr6:41559472-41567203:+
Coord C1 exon
chr6:41559472-41559604
Coord A exon
chr6:41563985-41564053
Coord C2 exon
chr6:41567132-41567203
Length
69 bp
Sequences
Splice sites
3' ss Seq
AATATTTTCTTTGTTTTTAGGTA
3' ss Score
10.88
5' ss Seq
TATGTGAGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
GAAATGATGACAATAGCTGTTCCCCACTCTCTCGCTGTCCTGCCGAGTGTACCTGCTTGGACACAGTGGTTCGATGTAGCAACAAAGCCTTGAAGGTCTTGCCCAAAGGAATTCCAAGAGATGTCACTGAATT
Seq A exon
GTATCTGGATGGGAACCAGTTTACCTTGGTTCCTAAGGAACTCTCTAACTACAAACATTTAACACTTAT
Seq C2 exon
AGACTTAAGTAACAACAGAATAAGCACCCTCTCTAATCAGAGCTTCAGCAACATGACCCAGCTCCTCACTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005108-'26-31,'26-30,27-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0146213=LRRNT=WD(100=62.2),PF127992=LRR_4=PU(6.8=6.7)
A:
PF127992=LRR_4=FE(52.3=100)
C2:
PF127992=LRR_4=PD(38.6=68.0),PF138551=LRR_8=PU(8.2=20.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGCTGTTCCCCACTCTCTCG
R:
CTGGGTCATGTTGCTGAAGCT
Band lengths:
181-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]