MmuEX6017593 @ mm9
Exon Skipping
Gene
ENSMUSG00000031558 | Slit2
Description
slit homolog 2 (Drosophila) [Source:MGI Symbol;Acc:MGI:1315205]
Coordinates
chr5:48629615-48635938:+
Coord C1 exon
chr5:48629615-48629747
Coord A exon
chr5:48633788-48633856
Coord C2 exon
chr5:48635867-48635938
Length
69 bp
Sequences
Splice sites
3' ss Seq
TGTTCTGTCCTTGTTTCTAGGTA
3' ss Score
12.47
5' ss Seq
TATGTGAGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
GAAATGATGACAATAGTTGCTCTCCACTCTCCCGTTGTCCTTCTGAATGTACCTGCTTGGATACAGTGGTACGATGTAGCAACAAGGGCTTGAAGGTTTTGCCTAAAGGTATTCCAAAAGATGTCACAGAGCT
Seq A exon
GTATCTGGATGGGAACCAGTTTACGCTGGTCCCGAAGGAACTCTCTAACTACAAACATTTAACACTTAT
Seq C2 exon
AGACTTAAGTAACAACCGAATAAGCACCCTTTCCAATCAAAGCTTCAGCAACATGACCCAGCTTCTCACCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031558-'22-23,'22-22,23-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0146213=LRRNT=WD(100=62.2),PF127992=LRR_4=PU(6.8=6.7)
A:
PF127992=LRR_4=FE(52.3=100)
C2:
PF127992=LRR_4=PD(38.6=68.0),PF138551=LRR_8=PU(9.1=20.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGTTGCTCTCCACTCTCCCG
R:
CTGGGTCATGTTGCTGAAGCT
Band lengths:
181-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: