GgaEX7004026 @ galGal4
Exon Skipping
Gene
ENSGALG00000014419 | SLIT2
Description
slit homolog 2 protein precursor [Source:RefSeq peptide;Acc:NP_001254004]
Coordinates
chr4:74600697-74604910:-
Coord C1 exon
chr4:74604778-74604910
Coord A exon
chr4:74603673-74603741
Coord C2 exon
chr4:74600697-74600768
Length
69 bp
Sequences
Splice sites
3' ss Seq
ATTTTATTTTTCTATTTTAGATA
3' ss Score
11.85
5' ss Seq
TATGTAAGT
5' ss Score
6.69
Exon sequences
Seq C1 exon
GAAATGATGACAATAGCTGCTCTCCGCTGTCCCGCTGTCCTGCAGAATGTACTTGTCTAGACACAGTTGTTCGCTGCAGCAACAAAGGCCTAAAAGCTTTGCCTAAAGGCATCCCAAAAGATGTAACTGAACT
Seq A exon
ATATTTGGATGGAAACCAGTTTACTCTTGTTCCTAAAGAGCTCTCCAACTACAAACATTTAACACTTAT
Seq C2 exon
AGATTTAAGTAACAACAGAATCAGCACTCTTTCTAATCAGAGCTTCAGCAACATGACTCAGCTGCTCACCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014419-'25-42,'25-39,26-42=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0146213=LRRNT=WD(100=62.2),PF127992=LRR_4=PU(6.8=6.7)
A:
PF127992=LRR_4=FE(52.3=100)
C2:
PF127992=LRR_4=PD(38.6=68.0),PF138551=LRR_8=PU(8.2=20.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATAGCTGCTCTCCGCTGTC
R:
AGTCATGTTGCTGAAGCTCTGA
Band lengths:
181-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]