HsaEX6083757 @ hg19
Exon Skipping
Gene
ENSG00000145147 | SLIT2
Description
slit homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:11086]
Coordinates
chr4:20544117-20550182:+
Coord C1 exon
chr4:20544117-20544249
Coord A exon
chr4:20547654-20547722
Coord C2 exon
chr4:20550111-20550182
Length
69 bp
Sequences
Splice sites
3' ss Seq
TATTGTTCCATTGTTTTTAGGTA
3' ss Score
9.46
5' ss Seq
TATGTGAGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
GAAATGATGACAATAGTTGCTCCCCACTTTCTCGCTGTCCTACTGAATGTACTTGCTTGGATACAGTCGTCCGATGTAGCAACAAGGGTTTGAAGGTCTTGCCGAAAGGTATTCCAAGAGATGTCACAGAGTT
Seq A exon
GTATCTGGATGGAAACCAATTTACACTGGTTCCCAAGGAACTCTCCAACTACAAACATTTAACACTTAT
Seq C2 exon
AGACTTAAGTAACAACAGAATAAGCACGCTTTCTAATCAGAGCTTCAGCAACATGACCCAGCTCCTCACCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145147-'26-27,'26-26,27-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0146213=LRRNT=WD(100=62.2),PF127992=LRR_4=PU(6.8=6.7)
A:
PF127992=LRR_4=FE(52.3=100)
C2:
PF127992=LRR_4=PD(38.6=68.0),PF138551=LRR_8=PU(8.2=20.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCACTTTCTCGCTGTCCTA
R:
GTGAGGAGCTGGGTCATGTTG
Band lengths:
181-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)