BtaEX6030652 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005108 | SLIT2
Description
slit homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:11086]
Coordinates
chr6:41487297-41506935:+
Coord C1 exon
chr6:41487297-41487368
Coord A exon
chr6:41500607-41500678
Coord C2 exon
chr6:41506864-41506935
Length
72 bp
Sequences
Splice sites
3' ss Seq
TCTTCTAATCTGTTTAACAGGCA
3' ss Score
8.74
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
TGACCTCAGTGAAAACCAGATTCAGGCAATTCCAAGGAAAGCTTTTCGTGGGGCAGTTGATATTAAAAATCT
Seq A exon
GCAACTGGATTACAACCACATCAGCTGTATTGAAGATGGGGCATTCAGGGCTCTCCGGGACCTGGAAGTGCT
Seq C2 exon
CACTCTCAACAATAACAACATTACTAGACTTTCTGTGGCAAGTTTCAACCATATGCCTAAACTTAGGACTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005108-'8-11,'8-10,9-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PU(8.2=20.0)
A:
PF138551=LRR_8=FE(39.3=100)
C2:
PF138551=LRR_8=FE(39.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCTCAGTGAAAACCAGATTCA
R:
AGTTTAGGCATATGGTTGAAACTTGC
Band lengths:
135-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]