DreEX6031588 @ danRer10
Exon Skipping
Gene
ENSDARG00000004246 | slit2
Description
slit homolog 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-010306-3]
Coordinates
chr1:23158115-23160328:+
Coord C1 exon
chr1:23158115-23158186
Coord A exon
chr1:23158643-23158714
Coord C2 exon
chr1:23160257-23160328
Length
72 bp
Sequences
Splice sites
3' ss Seq
TCTGTGATTTTCTCTCTCAGGCA
3' ss Score
10.64
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GGACCTGAGTGAAAATCAAATCCAGGGGATTCCCAGAAAAGCCTTCAGAGGATCTACAGAGATCAAAAACCT
Seq A exon
GCAGCTGGACTATAATCAGATTTCCTGCATTGAAGATGGAGCGTTCAGAGCTCTGCGGGACTTAGAAGTACT
Seq C2 exon
CACACTGAACAACAACAATATCTCTCGTTTGTCAGTGGCCAGTTTTAACCACATGCCCAAGCTCAGGACATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004246-'6-7,'6-6,9-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PU(8.2=20.0)
A:
PF138551=LRR_8=FE(39.3=100)
C2:
PF138551=LRR_8=FE(39.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCTGAGTGAAAATCAAATCCA
R:
ATGTCCTGAGCTTGGGCATGT
Band lengths:
143-215
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]