RnoEX6042592 @ rn6
Exon Skipping
Gene
ENSRNOG00000003840 | Slit2
Description
slit guidance ligand 2 [Source:RGD Symbol;Acc:69310]
Coordinates
chr14:66961861-66977993:-
Coord C1 exon
chr14:66977922-66977993
Coord A exon
chr14:66966161-66966232
Coord C2 exon
chr14:66961861-66961932
Length
72 bp
Sequences
Splice sites
3' ss Seq
TCTTTTAATCCGTTTAACAGGCA
3' ss Score
8.31
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
TGATCTCAGTGAAAATCAGATTCAAGCAATTCCAAGGAAGGCTTTCCGTGGTGCAGTTGACATTAAAAATCT
Seq A exon
GCAGTTGGATTACAACCAGATCAGCTGCATTGAAGATGGGGCATTCCGAGCTCTGCGAGATCTGGAAGTGCT
Seq C2 exon
CACTCTGAACAATAACAATATTACTAGACTTTCAGTGGCAAGTTTCAACCATATGCCTAAACTTAGGACATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003840-'6-10,'6-9,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PU(8.2=20.0)
A:
PF138551=LRR_8=FE(39.3=100)
C2:
PF138551=LRR_8=FE(39.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCAGTGAAAATCAGATTCAAGCA
R:
CCTAAGTTTAGGCATATGGTTGAAAC
Band lengths:
136-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]