HsaEX6083770 @ hg38
Exon Skipping
Gene
ENSG00000145147 | SLIT2
Description
slit guidance ligand 2 [Source:HGNC Symbol;Acc:HGNC:11086]
Coordinates
chr4:20467752-20486271:+
Coord C1 exon
chr4:20467752-20467823
Coord A exon
chr4:20480716-20480787
Coord C2 exon
chr4:20486200-20486271
Length
72 bp
Sequences
Splice sites
3' ss Seq
TCTTCTAATCTTTTTAACAGGCA
3' ss Score
9.28
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
TGATCTCAGTGAAAACCAAATTCAGGCAATCCCAAGGAAAGCTTTCCGTGGGGCAGTTGACATAAAAAATTT
Seq A exon
GCAACTGGATTACAACCAGATCAGCTGTATTGAAGATGGGGCATTCAGGGCTCTCCGGGACCTGGAAGTGCT
Seq C2 exon
CACTCTCAACAATAACAACATTACTAGACTTTCTGTGGCAAGTTTCAACCATATGCCTAAACTTAGGACTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145147-'8-20,'8-19,12-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(27.0=68.0),PF138551=LRR_8=PU(8.2=20.0)
A:
PF138551=LRR_8=FE(39.3=100)
C2:
PF138551=LRR_8=FE(39.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGTGAAAACCAAATTCAGGCA
R:
CCTAAGTTTAGGCATATGGTTGAAAC
Band lengths:
135-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains