BtaEX6030744 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001545 | SLC34A2
Description
solute carrier family 34 (type II sodium/phosphate cotransporter), member 2 [Source:HGNC Symbol;Acc:HGNC:11020]
Coordinates
chr6:46742083-46744017:+
Coord C1 exon
chr6:46742083-46742278
Coord A exon
chr6:46743390-46743485
Coord C2 exon
chr6:46743897-46744017
Length
96 bp
Sequences
Splice sites
3' ss Seq
CTGTCTATTGCTTTCCTCAGCTG
3' ss Score
7.77
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
GGCCTTTGCGGGGGCCACCGTCCATGACTTCTTCAACTGGCTCTCCGTGCTGGTGCTCTTGCCTCTGGAGGCCGCCACCGGTTACCTGGAGCGCCTGACCAACTTAGTAGTGGAGAGCTTCCACTTCAAGAATGGAGAGGAAGCCCCAGAACTTCTGAAAGTTATCACAGATCCCTTCACAAAGCTCATTATCCAG
Seq A exon
CTGGATAAAAGTATTCTCAACCAAATTGCAATGAATGATGAGTCGGTCCAAAACAAAAGTATGATCAAGATTTGGTGCAAAACTTTTACCAACGTG
Seq C2 exon
ACTGAGAGAAATGTCACCGTCCCCTCGCCTGAGAACTGCACCTCCCCTTCTCTCTGTTGGACGGATGGTTTGTACACCTGGACCATCAAGAACGTGACCTACAAGGAGAACATTGCCAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001545-'10-10,'10-8,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PD(26.4=56.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAATGGAGAGGAAGCCCCA
R:
GGTCACGTTCTTGATGGTCCA
Band lengths:
168-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]