GgaEX1053294 @ galGal3
Exon Skipping
Gene
ENSGALG00000014372 | Q6TQF9_CHICK
Description
NA
Coordinates
chr4:75888646-75892213:-
Coord C1 exon
chr4:75892018-75892213
Coord A exon
chr4:75891306-75891401
Coord C2 exon
chr4:75888646-75888766
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTCTTTTCTTAAAGCTT
3' ss Score
9.22
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GGCCTTTGCTGGGGCAACAATCCATGATTTCTTTAACTGGCTTGCTGTGTTTGCATTGTTGCCCATTGAAGTCATTTCTGGCTATCTTTACCATCTCACCAATGTTATAGTTGAGTCCTTTCATCTTGAAAGTGGTGAAGATGCCCCTGAGCTACTAAAAGTCATCACAGACCCTTTTACAAAGCTCATCATCGAG
Seq A exon
CTTGATAAATCTGTAATAAATGCAATCGCTACTAATGACGAATCAGCAAAAAACAAAAGCCTGGTAAAGGTTTGGTGCATAACTGAAACCAATGTG
Seq C2 exon
ACACTGCAGAATGTCACAATTCCACCTTCAGAGAACTGCACGTCTTCTGAACTTTGCTGGTCAGAAGGAAATGTGACGTGGACCATGAAAAACATATCTGAAACAGAATATATCACTAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014372-'9-10,'9-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PD(26.4=56.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCATTGAAGTCATTTCTGGC
R:
CGTGCAGTTCTCTGAAGGTGG
Band lengths:
178-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]