MmuEX6017689 @ mm10
Exon Skipping
Gene
ENSMUSG00000029188 | Slc34a2
Description
solute carrier family 34 (sodium phosphate), member 2 [Source:MGI Symbol;Acc:MGI:1342284]
Coordinates
chr5:53063849-53065617:+
Coord C1 exon
chr5:53063849-53064044
Coord A exon
chr5:53064799-53064894
Coord C2 exon
chr5:53065497-53065617
Length
96 bp
Sequences
Splice sites
3' ss Seq
TCCTCTATTTTTCCCCTCAGCTG
3' ss Score
9.9
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
GGCATTTGCAGGAGCCACTGTTCATGACTTCTTCAACTGGCTCTCTGTGTTCGTGCTCTTGCCTCTGGAGGCTGCCACCCATTACCTGGAGATCCTGACCAACCTTGTGTTAGAAACCTTCAAGTTCCAGAATGGAGAAGATGCCCCAGACATTCTGAAAGTCATCACAGACCCCTTCACAAAGCTCATCATCCAG
Seq A exon
CTGGATAAAAAGGTCATCCAACAAATCGCAATGGGTGACTCAGCGGCCCAGAACAAGAGCCTGATCAAGATCTGGTGTAAAAGTATAACCAATGTG
Seq C2 exon
ACTGAGATGAATGTCACCGTCCCCTCGACTGATAACTGCACCTCTCCTTCATATTGCTGGACTGATGGCATACAGACCTGGACCATCCAGAACGTTACCCAAAAGGAGAACATTGCTAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029188-'15-21,'15-13,16-21=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PD(28.5=62.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTGTGTTCGTGCTCTTGC
R:
AGGGGACGGTGACATTCATCT
Band lengths:
180-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types